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Version: 1.0.0 | Published: 8 Oct 2024 | Updated: 229 days ago

SARS-CoV-2 viral sequencing data (COG-UK data) - Lineage/Variant Data - Scotland

Dataset

Documentation

Description:
File contains basic public metadata, including sequence_name, location, date, pangolin lineage assignment, version and associated scores, scorpio VOC/VUI constellation call and associated scores, key spike protein mutations calls and a list of all nucleotide mutations found.

Coverage

Spatial:
United Kingdom,Scotland
Typical Age Range:
0-150
Follow Up:
Other
Pathway:
No

Provenance

Origin

Purposes:
Other
Sources:
LIMS
Collection Situations:
Other

Temporal

Accrual Periodicity:
Weekly
Distribution Release Date:
19 August 2021
Start Date:
28 February 2021
Time Lag:
1-2 weeks

Accessibility

Access

Access Service:
Scottish National Safe Haven / Trusted Research Environment https://publichealthscotland.scot/services/data-research-and-innovation-services/electronic-data-research-and-innovation-service-edris/national-safe-haven-nsh/
Delivery Lead Time:
Not applicable
Jurisdictions:
GB-SCT
Data Controller:
Public Health Scotland
Data Processor:
Public Health Scotland

Usage

Data Use Limitations:
Genetic studies only
Data Use Requirements:
Project-specific restrictions
Resource Creators:
COG-UK

Format and Standards

Vocabulary Encoding Schemes:
OTHER
Languages:
en
Formats:
csv

Observations

Statistical Population
Population Description
Population Size
Measured Property
Observation Date
Events
721005
Count
20 August 2021