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Version: 1.0.0 | Published: 8 Oct 2024 | Updated: 229 days ago

NIHR BioResource: SNP imputation data

Dataset

Documentation

Description:
The NIHR Bioresource consists of several groups of participants: ~70k from the general population and blood donors (COMPARE, INTERVAL and STRIDES studies); ~19k with one of ~50 rare diseases (RD) including a ~5k pilot for GEL; ~30k with Inflammatory Bowel Disease (IBD) which include the members of Gut Reaction, the Health Data Research Hub for IBD; and ~20k with Anxiety or depression (GLAD study). It intends to extend recruitment in all areas, and to other rare and common disease groups, with a target of ~300k by 2022. SNP chip data can be used to impute many of the (non-rare) SNPs not included on the chips. The NIHR BioResource is using a modified version of the UK Biobank protocol to improve the options for recall.

Coverage

Spatial:
United Kingdom
Typical Age Range:
18-85
Follow Up:
1 - 10 Years

Provenance

Origin

Purposes:
Study
Sources:
Machine generated
Collection Situations:
Other

Temporal

Accrual Periodicity:
Quarterly
Distribution Release Date:
31 March 2021
Start Date:
15 July 2019
Time Lag:
2-6 months

Accessibility

Access

Access Service:
Some de-identified data may be released to researchers in a platform-independent filetype (e.g. CSV). However, access to any data acquired via NHS Digital is subject to strict restrictions governing where data may be accessed and from which locale - access is currently via an experimental safe haven built in Microsoft Azure. It is also intended that SNP data be available from the European Genome-Phenome Archive (EBI"s EGA) via managed access.
Delivery Lead Time:
Not applicable
Jurisdictions:
GB-GBN
Data Controller:
Cambridge University Hospitals NHS Foundation Trust (CUH)
Data Processor:
Data processors are NIHR BioResource staff, others with Letters of Access to CUH and approved members of staff at the data centre (AIMES, https://aimes.uk/)

Usage

Data Use Limitations:
Research use only
Data Use Requirements:
  • Institution-specific restrictions
  • Project-specific restrictions
  • Return to database or resource
  • Time limit on use
  • User-specific restriction
Resource Creators:
NIHR BioResource. Acknowledgement text: "We thank NIHR BioResource volunteers for their participation, and gratefully acknowledge NIHR BioResource centres, NHS Trusts and staff for their contribution. We thank the National Institute for Health Research, NHS Blood and Transplant, and Health Data Research UK as part of the Digital Innovation Hub Programme. The views expressed are those of the author(s) and not necessarily those of the NHS, the NIHR or the Department of Health and Social Care."

Format and Standards

Vocabulary Encoding Schemes:
OTHER
Languages:
en
Formats:
  • text/plink
  • text/vcf