Version: 1.0.0 | Published: 8 Oct 2024 | Updated: 229 days ago
Documentation
Associated Media:
Description:
Data views that are common to both the rare disease and the cancer domains. This data pertains to sample handling, genome sequencing, and participant data.
Data Relating to Participants:
- participant: Data on each individual participant in the 100,000 Genomes Project, e.g. personal information (such as relatives or self-reported ethnicity); points of contact with the Project (e.g. handling Genomic Medicine Centre or Trust); and a record of the status of their clinical review.
- death_details: Data on participant deaths submitted by GMCs, likely less complete than the data collected by ONS and NHSE.
Data Relating to Samples:
- clinic_sample: Data describing the taking and handling of participant samples at the Genomic Medicine Centres, i.e. in the clinic, as well as the type of samples obtained. Because of the complexities of handling and managing tumour tissues samples in a clinical setting, there are many fields that are cancer-specific.
- clinic_sample_quality_check_result: Data describing the quality control of obtaining and handling participant samples at the Genomic Medicine Centres, i.e. in the clinic.
- laboratory_sample: Data describing the handling of samples at the biorepository and in preparation for sequencing, as well as the type of sample.
- plated_sample: Data describing the handling and QC of samples at Illumina (the sequencing provider).
- laboratory_sample_omics_availability: Availability of samples collected from participants in the 100,000 Genomes Project for the purpose of omics research. Data includes: Participant ID, Sample Type (e.g. Serum, RNA Blood), the number of aliquots of that sample type for that participant, and the availability status - whether the sample has already been used for a research project. Research proposals for the use of these samples can be submitted, via the GECIP team, to the Scientific Advisory Committee and Access Review Committee.
Coverage
Typical Age Range:
0-150
Follow Up:
Other
Pathway:
Linked datasets cover secondary care.
Provenance
Temporal
Accrual Periodicity:
Quarterly
Distribution Release Date:
30 March 2023
Start Date:
01 January 2012
End Date:
31 December 2022
Time Lag:
2-6 months
Accessibility
Access
Access Service:
More information about the Genomics England Research Environment can be found
here:
https://www.genomicsengland.co.uk/about-genomics-england/research-environment/
https://research-help.genomicsengland.co.uk/display/GERE/1.+The+Genomics+England+Research+Environment
Genomics England 100k participants have consented to longitudinal lifetime
followup and recontact safely through our clinical network. BRST (Bioinformatics
Research Services) are a team of bioinformatics who know the dataset inside out
and provide consultancy projects on a case by case basis. Our network of
clinical and medical experts can be made available on case by case basis.
Researchers have the opportunity to work with our and access the GeCIP network
who are a community of world-leading experts in specific cancers and rare
diseases.
Access Request Cost:
Fees will be dependent on the type of access that is necessary. Raw data is not
eligible for export. Summary-level data may be exported provided that it is
approved through the Genomics England Airlock Process
Delivery Lead Time:
Not applicable
Jurisdictions:
GB-GBN
Data Controller:
GENOMICS ENGLAND
Data Processor:
GENOMICS ENGLAND
Usage
Resource Creators:
The 100;,;000 Genomes Project Protocol v3;,;Genomics England. doi:10.6084/m9.figshare.4530893.v3. 2017. Publications that use the Genomics England Database should include an author as: Genomics England Research Consortium. Please see publication policy.
Format and Standards
Vocabulary Encoding Schemes:
- READ
- OTHER
- SNOMED CT
- LOCAL
- NHS NATIONAL CODES
- ICD10
- OPCS4
- ODS
Languages:
en
Formats:
Multiple formats available
Observations
Statistical Population
Population Description
Population Size
Measured Property
Observation Date
Persons
Cancer Tumour - Number of genomes
-1
Count
01 January 1970
Persons
Rare Disease Participants
-1
Count
01 January 1970
Persons
Cancer Germline - Number of genomes
-1
Count
01 January 1970
Persons
Rare Disease - Number of genomes
-1
Count
01 January 1970
Persons
Cancer Participants
-1
Count
01 January 1970